=== Current properties === 

EnrichmentMap.default_pvalue=0.005
EnrichmentMap.default_qvalue=0.10
EnrichmentMap.default_overlap=0.50
EnrichmentMap.default_jaccard=0.25
	Descr:		Default values to populate the EnrichmentMapInputPanel
	Values:		float >0.0, <1.0
	Versions:	since [274]
	Status:		active
	Tickets:	#2, #124

EnrichmentMap.default_similarity_metric=overlap
	Descr:		Default values to populate the EnrichmentMapInputPanel
	Values:		overlap, jaccard
	Versions:	since [498], replaces EnrichmentMap.default_overlap_metric for consistent terminology
	Status:		active
	Tickets:	#2, #124

EnrichmentMap.disable_heatmap_autofocus=FALSE
	Descr:		Flag to override the automatic focus on the Heatmap once a Node
				or Edge is selected.
	Values:		TRUE, FALSE
	Versions:	since [274]
	Status:		active
	Tickets:	#2

EnrichmentMap.default_sort_method=Hierarchical Cluster
	Descr:		Set the default sorting in the legend/parameters panel to 
				Hierarchical Clustering, Ranks (default the first rank file, if 
				no ranks then it is no sort), Column (default is the first 
				column) or no sort.
	Values:		Hierarchical Cluster, Ranks, Columns, No Sort
	Versions:	since [413]
	Status:		active
	Tickets:	#84, #124

EnrichmentMap.hieracical_clustering_threshold=1000
	Descr:		Threshold for the maximum number of Genes before a dialog
				opens to confirm if clustering should be performed.
	Values:		Integer
	Versions:	since [504]
	Status:		active
	Tickets:	#84, #124
	
nodelinkouturl.MSigDb.GSEA\ Gene\ sets=http\://www.broad.mit.edu/gsea/msigdb/cards/%ID%.html
	Descr:		LinkOut URL for MSigDb.GESA Gene sets
	Values:		URL
	Versions:	since [410]
	Status:		active
	Tickets:	#23

=== deprecated properties (but still evaluated) ===

EnrichmentMap.default_overlap_metric=overlap
	Descr:		Default values to populate the EnrichmentMapInputPanel
	Values:		overlap, jaccard
	Versions:	from [274] to [498], since then overruled by EnrichmentMap.default_similarity_metric=overlap
	Status:		deprecated since [498]
	Tickets:	#2, #124

=== old properties (no more active) === 

nodelinkouturl.MSigDb=http\://www.broad.mit.edu/gsea/msigdb/cards/%ID%.html
	Descr:		LinkOut URL for MSigDb, replaced by nodelinkouturl.MSigDb.GSEA\ Gene\ sets
				and will be automatically removed by Plugin [410] or newer.
	Values:		URL
	Versions:	before [410]
	Status:		deprecated
	Tickets:	#23

EnrichmentMap.disable_genesetSummary_autofocus=FALSE
	Descr:		Flag to override the automatic focus on the SummaryPanel once 
				a Node or Edge is selected.
	Values:		TRUE, FALSE
	Versions:	active between [274] and [299] (trunk)
	Status:		removed
	Tickets:	#2, #34

EnrichmentMap.Heatmap_Node_Limit=50
EnrichmentMap.Heatmap_Edge_Limit=100
	Status:		removed
	Versions: 	active in between [404] and [408] (trunk)
	Descr:		thresholds for the number of nodes/edges on which the heatmap 
				won't get updated due to performance issues.
	Tickets:	#80, #81, #84
	Values:		Integer
	
EnrichmentMap.hieracical_clusteting_theshold=1000
	Descr:		Threshold for the maximum number of Genes before a dialog
				opens to confirm if clustering should be performed.
	Values:		Integer
	Versions:	between [415] and [496]
	Status:		removed because of Typo(s)
	Tickets:	#84
